PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022948-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 92aa    MW: 10365.8 Da    PI: 8.2279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022948-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.1e-0919591454
                        HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        d+iN+  ++L++llP+ +    s K+s a +L+++++YI+ L
  WALNUT_00022948-RA 19 DQINDLVSKLQQLLPEiR-DRLSDKVSAANVLQETCNYIRGL 59
                        79**************76.899******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.785559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-91578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-101978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-61959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRTRQ PGCSRISDDQ INDLVSKLQQ LLPEIRDRLS DKVSAANVLQ ETCNYIRGLH  60
KEVDDLSERL SELLASTDTA QAAIIRSLLV QK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681754.12e-42PREDICTED: transcription factor PRE3-like
RefseqXP_013591036.12e-42PREDICTED: transcription factor PRE3-like
SwissprotF4JCN92e-38PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0D3CWN22e-42A0A0D3CWN2_BRAOL; Uncharacterized protein
TrEMBLA0A078D9A32e-42A0A078D9A3_BRANA; BnaA07g22200D protein
STRINGBra003797.1-P1e-40(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.11e-39BANQUO 3